Linelle Abueg

Scientific Systems Administrator at The Rockefeller University

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art by will colpoys

Hello! I am a bioinformatician who enjoys using genomic resources and tools to answer evolutionary questions.

I have had experience conducting analyses for population genomic questions related to neutral population structure as well as potential signatures of adaptive evolution. I have extensive experience with next-generation and third-generation sequencing, particularly targeted exome sequencing and ddRAD approaches for the former, and PacBio and Oxford NanoPore long reads for the latter. I’ve worked exclusively in non-model organisms, so I am passionate about making resources available for researchers studying non-model systems, a goal I contributed to in my previous work at the Vertebrate Genome Lab. In my current position at The Rockefeller University’s HPC Resource Center, I continue to help researchers get their work done by educating them on how to best use HPC resources.

selected publications

  1. Nat Biotechnol
    Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
    Delphine Larivière, Linelle Abueg, Nadolina Brajuka, and 38 more authors
    Nature Biotechnology, Jan 2024
  2. Bioinformatics
    Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs
    Giulio Formenti, Linelle Abueg, Angelo Brajuka, and 5 more authors
    Bioinformatics, Jul 2022
  3. BMS Bioinformatics
    MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
    Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, and 24 more authors
    BMC Bioinformatics, Jul 2023
  4. Ecol Evol
    Exome sequencing of deer mice on two California Channel Islands identifies potential adaptation to strongly contrasting ecological conditions
    John L. Orrock, Linelle Abueg, Stephen Gammie, and 1 more author
    Ecology and Evolution, Nov 2021