Linelle Abueg
Scientific Systems Administrator at The Rockefeller University

art by will colpoys
Hello! I am a bioinformatician who enjoys using genomic resources and tools to answer evolutionary questions.
I have had experience conducting analyses for population genomic questions related to neutral population structure as well as potential signatures of adaptive evolution. I have extensive experience with next-generation and third-generation sequencing, particularly targeted exome sequencing and ddRAD approaches for the former, and PacBio and Oxford NanoPore long reads for the latter. I’ve worked exclusively in non-model organisms, so I am passionate about making resources available for researchers studying non-model systems, a goal I contributed to in my previous work at the Vertebrate Genome Lab. In my current position at The Rockefeller University’s HPC Resource Center, I continue to help researchers get their work done by educating them on how to best use HPC resources.
selected publications
- Nat BiotechnolScalable, accessible and reproducible reference genome assembly and evaluation in GalaxyNature Biotechnology, Jan 2024
- BioinformaticsGfastats: conversion, evaluation and manipulation of genome sequences using assembly graphsBioinformatics, Jul 2022
- BMS BioinformaticsMitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity readsBMC Bioinformatics, Jul 2023
- Ecol EvolExome sequencing of deer mice on two California Channel Islands identifies potential adaptation to strongly contrasting ecological conditionsEcology and Evolution, Nov 2021