publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

  1. J Hered
    A chromosome-level genome of the Nicobar pigeon, Caloenas nicobarica
    Nicolas Alexandre, Jennifer Balacco, Tatiana Tilley, and 9 more authors
    Journal of Heredity, May 2025
    DOI
  2. Wellcome Open Res
    A chromosome-level reference genome for the critically endangered Southern Corroboree frog (Pseudophryne corroboree)
    Tiffany A. Kosch, Lee Berger, Andrew J. Crawford, and 18 more authors
    Wellcome Open Research, Apr 2025
    DOI
  3. preprint
    Genomic comparisons shed light on the adaptive basis of brain size plasticity and chromosomal instability in the Eurasian common shrew
    William R Thomas, Tanya M Lama, Diana Moreno-Santillan, and 17 more authors
    Apr 2025
    DOI
  4. Wellcome Open Res
    The genome sequence of Glossophaga mutica (Chiroptera, Phyllostomidae, Glossophaginae; Merriam, 1898)
    Nancy B. Simmons, Melissa R. Ingala, Brian P. O’Toole, and 14 more authors
    Wellcome Open Research, Apr 2025
    DOI
  5. Front Mar Sci
    Genomic infrastructure for cetacean research and conservation: reference genomes for eight families spanning the cetacean tree of life
    Phillip A. Morin, Bernhard Bein, Chiara Bortoluzzi, and 50 more authors
    Frontiers in Marine Science, Jul 2025
    DOI

2024

  1. Nat Biotechnol
    Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
    Delphine Larivière, Linelle Abueg, Nadolina Brajuka, and 38 more authors
    Nature Biotechnology, Jan 2024
    DOI
  2. Nat Commun
    Ecological diversification of sea catfishes is accompanied by genome-wide signatures of positive selection
    Melissa Rincon-Sandoval, Rishi De-Kayne, Stephen D. Shank, and 14 more authors
    Nature Communications, Nov 2024
    DOI
  3. Wellcome Open Res
    The genome sequence of Rhynchonycteris naso, Peters, 1867 (Chiroptera, Emballonuridae, Rhynchonycteris)
    Ine Tussenbroek, Mirjam Knörnschild, Martina Nagy, and 13 more authors
    Wellcome Open Research, Jul 2024
    DOI
  4. J Hered
    A chromosome-level genome assembly for the dugong (Dugong dugon)
    Dorothy Nevé Baker, Linelle Abueg, Merly Escalona, and 11 more authors
    Journal of Heredity, Jan 2024
    DOI

2023

  1. BMS Bioinformatics
    MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
    Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, and 24 more authors
    BMC Bioinformatics, Jul 2023
    DOI
  2. G3 (Bethesda)
    A chromosome-level genome assembly for the Rock Ptarmigan (Lagopus muta)
    Theodore E Squires, Patrik Rödin-Mörch, Giulio Formenti, and 8 more authors
    G3: Genes, Genomes, Genetics, May 2023
    DOI
  3. Cell Rep
    A chromosome-level reference genome and pangenome for barn swallow population genomics
    Simona Secomandi, Guido R. Gallo, Marcella Sozzoni, and 36 more authors
    Cell Reports, Jan 2023
    DOI

2022

  1. Bioinformatics
    Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs
    Giulio Formenti, Linelle Abueg, Angelo Brajuka, and 5 more authors
    Bioinformatics, Jul 2022
    DOI

2021

  1. Ecol Evol
    Exome sequencing of deer mice on two California Channel Islands identifies potential adaptation to strongly contrasting ecological conditions
    John L. Orrock, Linelle Abueg, Stephen Gammie, and 1 more author
    Ecology and Evolution, Nov 2021
    DOI